Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
LUAD rs77332374 chr11:62608733 G/A 2.27E-5 505 21.93 21.73 7.7 KM Plot
LUAD rs77338752 chr17:47372328 A/C 5.19E-11 503 21.93 19.55 4.55 KM Plot
LUAD rs77488129 chr17:47448970 G/A 6.18E-11 501 21.93 19.15 4.55 KM Plot
LUAD rs77903746 chr10:132068930 G/A 1.11E-16 501 21.9 20.87 2.95 KM Plot
LUAD rs77940410 chr11:62582338 T/C 2.45E-5 504 21.93 21.03 7.7 KM Plot
LUAD rs78113800 chr2:10962982 G/C 2.72E-5 501 20.83 33.17 4.13 KM Plot
LUAD rs78208413 chr17:47398282 G/A 5.65E-11 502 21.93 20.3 4.55 KM Plot
LUAD rs78400686 chr7:158790046 C/A 2.76E-9 491 22.3 20 4.95 KM Plot
LUAD rs78412755 chr10:132074568 G/A 1.11E-16 502 21.88 20.92 2.95 KM Plot
LUAD rs78482916 chr10:132129206 G/C 1.14E-13 502 21.82 20.97 1.93 KM Plot
LUAD rs79100284 chr17:45848646 C/T 1.02E-6 504 21.87 21.4 3.97 KM Plot
LUAD rs79169519 chr7:158848012 C/T 5.68E-10 483 22.98 20.17 4.95 KM Plot
LUAD rs79179226 chr2:10929415 A/G 3.56E-8 504 20.82 32.28 2.7 KM Plot
LUAD rs79209445 chr17:45833225 C/T 8.97E-7 504 21.88 20.87 3.97 KM Plot
LUAD rs79227348 chr3:108191732 G/A 6.41E-6 498 21.92 20.63 12.8 KM Plot